High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED.
Kaminski, James; Gibson, Molly K; Franzosa, Eric A; Segata, Nicola; Dantas, Gautam; Huttenhower, Curtis.
PLoS Comput Biol
; 11(12): e1004557, 2015 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-26682918
Fast hierarchical Bayesian analysis of population structure.
Mutant phenotypes for thousands of bacterial genes of unknown function.
The Revolution Continues: Newly Discovered Systems Expand the CRISPR-Cas Toolkit.
PanOCT: automated clustering of orthologs using conserved gene neighborhood for pan-genomic analysis of bacterial strains and closely related species.
BlaPred: Predicting and classifying ß-lactamase using a 3-tier prediction system via Chou's general PseAAC.
Remarkable diversification of bacterial azoreductases: primary sequences, structures, substrates, physiological roles, and biotechnological applications.
Clustering evolving proteins into homologous families.
Expanded microbial genome coverage and improved protein family annotation in the COG database.
Application of a hierarchical enzyme classification method reveals the role of gut microbiome in human metabolism.
New Haplotypes of the Mitochondrial Gene CytB in the Nesting Population of the Siberian Black Kite Milvus migrans lineatus Gray, 1831 in the Territory of the Republic of Tyva.