Suppression of artifacts and barcode bias in high-throughput transcriptome analyses utilizing template switching.
Tang, Dave T P; Plessy, Charles; Salimullah, Md; Suzuki, Ana Maria; Calligaris, Raffaella; Gustincich, Stefano; Carninci, Piero.
Nucleic Acids Res
; 41(3): e44, 2013 Feb 01.
Artigo em Inglês | MEDLINE | ID: mdl-23180801
High-throughput determination of RNA structures.
Accurate detection of chemical modifications in RNA by mutational profiling (MaP) with ShapeMapper 2.
SAVER: gene expression recovery for single-cell RNA sequencing.
SHAPE-Seq 2.0: systematic optimization and extension of high-throughput chemical probing of RNA secondary structure with next generation sequencing.
RNA Framework: an all-in-one toolkit for the analysis of RNA structures and post-transcriptional modifications.
Advances in CLIP Technologies for Studies of Protein-RNA Interactions.
Intramolecular circularization increases efficiency of RNA sequencing and enables CLIP-Seq of nuclear RNA from human cells.
Robust statistical modeling improves sensitivity of high-throughput RNA structure probing experiments.
Classification of RNA structure change by 'gazing' at experimental data.