Xlink-identifier: an automated data analysis platform for confident identifications of chemically cross-linked peptides using tandem mass spectrometry.
Du, Xiuxia; Chowdhury, Saiful M; Manes, Nathan P; Wu, Si; Mayer, M Uljana; Adkins, Joshua N; Anderson, Gordon A; Smith, Richard D.
J Proteome Res
; 10(3): 923-31, 2011 Mar 04.
Artigo em Inglês | MEDLINE | ID: mdl-21175198
Ubiquitin chain conformation regulates recognition and activity of interacting proteins.
Characterizing ubiquitination sites by peptide-based immunoaffinity enrichment.
Pushing the Boundaries of Chemical Protein Synthesis: The Case of Ubiquitin Chains and Polyubiquitinated Peptides and Proteins.
Online deuterium hydrogen exchange and protein digestion coupled with ion mobility spectrometry and tandem mass spectrometry.
Identification of cross-linked peptides after click-based enrichment using sequential collision-induced dissociation and electron transfer dissociation tandem mass spectrometry.
Differential Tandem Mass Spectrometry-Based Cross-Linker: A New Approach for High Confidence in Identifying Protein Cross-Linking.
Defining the human deubiquitinating enzyme interaction landscape.
Ubiquitin S65 phosphorylation engenders a pH-sensitive conformational switch.
Ubiquitin-binding proteins: decoders of ubiquitin-mediated cellular functions.
The mechanism of linkage-specific ubiquitin chain elongation by a single-subunit E2.