Pesquisa | Biblioteca Virtual em Saúde

1.

Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer.

Zhang, Hui; Liu, Tao; Zhang, Zhen; Payne, Samuel H; Zhang, Bai; McDermott, Jason E; Zhou, Jian-Ying; Petyuk, Vladislav A; Chen, Li; Ray, Debjit; Sun, Shisheng; Yang, Feng; Chen, Lijun; Wang, Jing; Shah, Punit; Cha, Seong Won; Aiyetan, Paul; Woo, Sunghee; Tian, Yuan; Gritsenko, Marina A; Clauss, Therese R; Choi, Caitlin; Monroe, Matthew E; Thomas, Stefani; Nie, Song; Wu, Chaochao; Moore, Ronald J; Yu, Kun-Hsing; Tabb, David L; Fenyö, David; Bafna, Vineet; Wang, Yue; Rodriguez, Henry; Boja, Emily S; Hiltke, Tara; Rivers, Robert C; Sokoll, Lori; Zhu, Heng; Shih, Ie-Ming; Cope, Leslie; Pandey, Akhilesh; Zhang, Bing; Snyder, Michael P; Levine, Douglas A; Smith, Richard D; Chan, Daniel W; Rodland, Karin D.

Cell; 166(3): 755-765, 2016 Jul 28.

Artigo em Inglês | MEDLINE | ID: mdl-27372738

2.

Ribosomal protein s15 phosphorylation mediates LRRK2 neurodegeneration in Parkinson's disease.

Martin, Ian; Kim, Jungwoo Wren; Lee, Byoung Dae; Kang, Ho Chul; Xu, Jin-Chong; Jia, Hao; Stankowski, Jeannette; Kim, Min-Sik; Zhong, Jun; Kumar, Manoj; Andrabi, Shaida A; Xiong, Yulan; Dickson, Dennis W; Wszolek, Zbigniew K; Pandey, Akhilesh; Dawson, Ted M; Dawson, Valina L.

Cell; 157(2): 472-485, 2014 Apr 10.

Artigo em Inglês | MEDLINE | ID: mdl-24725412

3.

Pyruvate kinase M2 is a PHD3-stimulated coactivator for hypoxia-inducible factor 1.

Luo, Weibo; Hu, Hongxia; Chang, Ryan; Zhong, Jun; Knabel, Matthew; O'Meally, Robert; Cole, Robert N; Pandey, Akhilesh; Semenza, Gregg L.

Cell; 145(5): 732-44, 2011 May 27.

Artigo em Inglês | MEDLINE | ID: mdl-21620138

4.

Discovery of noncanonical translation initiation sites through mass spectrometric analysis of protein N termini.

Na, Chan Hyun; Barbhuiya, Mustafa A; Kim, Min-Sik; Verbruggen, Steven; Eacker, Stephen M; Pletnikova, Olga; Troncoso, Juan C; Halushka, Marc K; Menschaert, Gerben; Overall, Christopher M; Pandey, Akhilesh.

Genome Res; 28(1): 25-36, 2018 01.

Artigo em Inglês | MEDLINE | ID: mdl-29162641

5.

Integrated Transcriptomic and Proteomic Analysis of Human Eccrine Sweat Glands Identifies Missing and Novel Proteins.

Na, Chan Hyun; Sharma, Neeraj; Madugundu, Anil K; Chen, Ruiqiang; Aksit, Melis Atalar; Rosson, Gedge D; Cutting, Garry R; Pandey, Akhilesh.

Mol Cell Proteomics; 18(7): 1382-1395, 2019 07.

Artigo em Inglês | MEDLINE | ID: mdl-30979791

6.

Proteomic composition and immunomodulatory properties of urinary bladder matrix scaffolds in homeostasis and injury.

Sadtler, Kaitlyn; Sommerfeld, Sven D; Wolf, Matthew T; Wang, Xiaokun; Majumdar, Shoumyo; Chung, Liam; Kelkar, Dhanashree S; Pandey, Akhilesh; Elisseeff, Jennifer H.

Semin Immunol; 29: 14-23, 2017 02.

Artigo em Inglês | MEDLINE | ID: mdl-28583764

7.

Identification of long-lived synaptic proteins by proteomic analysis of synaptosome protein turnover.

Heo, Seok; Diering, Graham H; Na, Chan Hyun; Nirujogi, Raja Sekhar; Bachman, Julia L; Pandey, Akhilesh; Huganir, Richard L.

Proc Natl Acad Sci U S A; 115(16): E3827-E3836, 2018 04 17.

Artigo em Inglês | MEDLINE | ID: mdl-29610302

8.

Ubiquilin 2 modulates ALS/FTD-linked FUS-RNA complex dynamics and stress granule formation.

Alexander, Elizabeth J; Ghanbari Niaki, Amirhossein; Zhang, Tao; Sarkar, Jaya; Liu, Yang; Nirujogi, Raja Sekhar; Pandey, Akhilesh; Myong, Sua; Wang, Jiou.

Proc Natl Acad Sci U S A; 115(49): E11485-E11494, 2018 Dec 04.

Artigo em Inglês | MEDLINE | ID: mdl-30442662

9.

GBA1 deficiency negatively affects physiological α-synuclein tetramers and related multimers.

Kim, Sangjune; Yun, Seung Pil; Lee, Saebom; Umanah, George Essien; Bandaru, Veera Venkata Ratnam; Yin, Xiling; Rhee, Peter; Karuppagounder, Senthilkumar S; Kwon, Seung-Hwan; Lee, Hojae; Mao, Xiaobo; Kim, Donghoon; Pandey, Akhilesh; Lee, Gabsang; Dawson, Valina L; Dawson, Ted M; Ko, Han Seok.

Proc Natl Acad Sci U S A; 115(4): 798-803, 2018 01 23.

Artigo em Inglês | MEDLINE | ID: mdl-29311330

10.

Toward the human cellular microRNAome.

McCall, Matthew N; Kim, Min-Sik; Adil, Mohammed; Patil, Arun H; Lu, Yin; Mitchell, Christopher J; Leal-Rojas, Pamela; Xu, Jinchong; Kumar, Manoj; Dawson, Valina L; Dawson, Ted M; Baras, Alexander S; Rosenberg, Avi Z; Arking, Dan E; Burns, Kathleen H; Pandey, Akhilesh; Halushka, Marc K.

Genome Res; 27(10): 1769-1781, 2017 10.

Artigo em Inglês | MEDLINE | ID: mdl-28877962

11.

Integrating transcriptomic and proteomic data for accurate assembly and annotation of genomes.

Prasad, T S Keshava; Mohanty, Ajeet Kumar; Kumar, Manish; Sreenivasamurthy, Sreelakshmi K; Dey, Gourav; Nirujogi, Raja Sekhar; Pinto, Sneha M; Madugundu, Anil K; Patil, Arun H; Advani, Jayshree; Manda, Srikanth S; Gupta, Manoj Kumar; Dwivedi, Sutopa B; Kelkar, Dhanashree S; Hall, Brantley; Jiang, Xiaofang; Peery, Ashley; Rajagopalan, Pavithra; Yelamanchi, Soujanya D; Solanki, Hitendra S; Raja, Remya; Sathe, Gajanan J; Chavan, Sandip; Verma, Renu; Patel, Krishna M; Jain, Ankit P; Syed, Nazia; Datta, Keshava K; Khan, Aafaque Ahmed; Dammalli, Manjunath; Jayaram, Savita; Radhakrishnan, Aneesha; Mitchell, Christopher J; Na, Chan-Hyun; Kumar, Nirbhay; Sinnis, Photini; Sharakhov, Igor V; Wang, Charles; Gowda, Harsha; Tu, Zhijian; Kumar, Ashwani; Pandey, Akhilesh.

Genome Res; 27(1): 133-144, 2017 01.

Artigo em Inglês | MEDLINE | ID: mdl-28003436

12.

C9orf72 nucleotide repeat structures initiate molecular cascades of disease.

Haeusler, Aaron R; Donnelly, Christopher J; Periz, Goran; Simko, Eric A J; Shaw, Patrick G; Kim, Min-Sik; Maragakis, Nicholas J; Troncoso, Juan C; Pandey, Akhilesh; Sattler, Rita; Rothstein, Jeffrey D; Wang, Jiou.

Nature; 507(7491): 195-200, 2014 Mar 13.

Artigo em Inglês | MEDLINE | ID: mdl-24598541

13.

USP9X controls translation efficiency via deubiquitination of eukaryotic translation initiation factor 4A1.

Li, Zengxia; Cheng, Zhao; Raghothama, Chaerkady; Cui, Zhaomeng; Liu, Kaiyu; Li, Xiaojing; Jiang, Chenxiao; Jiang, Wei; Tan, Minjia; Ni, Xiaohua; Pandey, Akhilesh; Liu, Jun O; Dang, Yongjun.

Nucleic Acids Res; 46(2): 823-839, 2018 Jan 25.

Artigo em Inglês | MEDLINE | ID: mdl-29228324

14.

H3K4me3 induces allosteric conformational changes in the DNA-binding and catalytic regions of the V(D)J recombinase.

Bettridge, John; Na, Chan Hyun; Pandey, Akhilesh; Desiderio, Stephen.

Proc Natl Acad Sci U S A; 114(8): 1904-1909, 2017 02 21.

Artigo em Inglês | MEDLINE | ID: mdl-28174273

15.

Transcriptomic Profiles of Confirmed Pediatric Tuberculosis Patients and Household Contacts Identifies Active Tuberculosis, Infection, and Treatment Response among Indian Children.

Tornheim, Jeffrey A; Madugundu, Anil K; Paradkar, Mandar; Fukutani, Kiyoshi F; Queiroz, Artur T L; Gupte, Nikhil; Gupte, Akshay N; Kinikar, Aarti; Kulkarni, Vandana; Balasubramanian, Usha; Sreenivasamurthy, Sreelakshmi; Raja, Remya; Pradhan, Neeta; Shivakumar, Shri Vijay Bala Yogendra; Valvi, Chhaya; Hanna, Luke Elizabeth; Andrade, Bruno B; Mave, Vidya; Pandey, Akhilesh; Gupta, Amita.

J Infect Dis; 2019 Dec 04.

Artigo em Inglês | MEDLINE | ID: mdl-31796955

16.

Integrated Transcriptomic and Proteomic Analysis of Primary Human Umbilical Vein Endothelial Cells.

Madugundu, Anil K; Na, Chan Hyun; Nirujogi, Raja Sekhar; Renuse, Santosh; Kim, Kwang Pyo; Burns, Kathleen H; Wilks, Christopher; Langmead, Ben; Ellis, Shannon E; Collado-Torres, Leonardo; Halushka, Marc K; Kim, Min-Sik; Pandey, Akhilesh.

Proteomics; 19(15): e1800315, 2019 Aug.

Artigo em Inglês | MEDLINE | ID: mdl-30983154

17.

Center of Mass Calculation in Combination with MS/MS allows Robust Identification of Single Amino Acid Polymorphisms in Clinical Measurements of Insulin-Like Growth Factor 1.

Maus, Anthony; Kemp, Jennifer; Milosevic, Dragana; Renuse, Santosh; Pandey, Akhilesh; Singh, Ravinder J; Grebe, Stefan K G.

J Proteome Res; 2019 Nov 18.

Artigo em Inglês | MEDLINE | ID: mdl-31736316

18.

Proteomic Analysis of Plasmodium Merosomes: The Link between Liver and Blood Stages in Malaria.

Shears, Melanie J; Sekhar Nirujogi, Raja; Swearingen, Kristian E; Renuse, Santosh; Mishra, Satish; Jaipal Reddy, Panga; Moritz, Robert L; Pandey, Akhilesh; Sinnis, Photini.

J Proteome Res; 18(9): 3404-3418, 2019 Sep 06.

Artigo em Inglês | MEDLINE | ID: mdl-31335145

19.

Accurate Precursor Mass Assignment Improves Peptide Identification in Data-Independent Acquisition Mass Spectrometry.

Mun, Dong-Gi; Nam, Dowoon; Kim, Hokeun; Pandey, Akhilesh; Lee, Sang-Won.

Anal Chem; 91(13): 8453-8460, 2019 Jul 02.

Artigo em Inglês | MEDLINE | ID: mdl-31247731

20.

MoS₂-Modified Curcumin Nanostructures: The Novel Theranostic Hybrid Having Potent Antibacterial and Antibiofilm Activities against Multidrug-Resistant Hypervirulent Klebsiella pneumoniae.

Singh, Ashish Kumar; Mishra, Himanshu; Firdaus, Zeba; Yadav, Shivangi; Aditi, Prerana; Nandy, Nabarun; Sharma, Kavyanjali; Bose, Priyanka; Pandey, Akhilesh Kumar; Chauhan, Brijesh Singh; Neogi, Kaushik; Vikram, Kunwar; Srivastava, Anchal; Kar, Amrita Ghosh; Prakash, Pradyot.

Chem Res Toxicol; 32(8): 1599-1618, 2019 Aug 19.

Artigo em Inglês | MEDLINE | ID: mdl-31315397

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