Pesquisa | Biblioteca Virtual em Saúde

1.

Neuronal Activity Promotes Glioma Growth through Neuroligin-3 Secretion.

Venkatesh, Humsa S; Johung, Tessa B; Caretti, Viola; Noll, Alyssa; Tang, Yujie; Nagaraja, Surya; Gibson, Erin M; Mount, Christopher W; Polepalli, Jai; Mitra, Siddhartha S; Woo, Pamelyn J; Malenka, Robert C; Vogel, Hannes; Bredel, Markus; Mallick, Parag; Monje, Michelle.

Cell; 161(4): 803-16, 2015 May 07.

Artigo em Inglês | MEDLINE | ID: mdl-25913192

2.

How many human proteoforms are there?

Aebersold, Ruedi; Agar, Jeffrey N; Amster, I Jonathan; Baker, Mark S; Bertozzi, Carolyn R; Boja, Emily S; Costello, Catherine E; Cravatt, Benjamin F; Fenselau, Catherine; Garcia, Benjamin A; Ge, Ying; Gunawardena, Jeremy; Hendrickson, Ronald C; Hergenrother, Paul J; Huber, Christian G; Ivanov, Alexander R; Jensen, Ole N; Jewett, Michael C; Kelleher, Neil L; Kiessling, Laura L; Krogan, Nevan J; Larsen, Martin R; Loo, Joseph A; Ogorzalek Loo, Rachel R; Lundberg, Emma; MacCoss, Michael J; Mallick, Parag; Mootha, Vamsi K; Mrksich, Milan; Muir, Tom W; Patrie, Steven M; Pesavento, James J; Pitteri, Sharon J; Rodriguez, Henry; Saghatelian, Alan; Sandoval, Wendy; Schlüter, Hartmut; Sechi, Salvatore; Slavoff, Sarah A; Smith, Lloyd M; Snyder, Michael P; Thomas, Paul M; Uhlén, Mathias; Van Eyk, Jennifer E; Vidal, Marc; Walt, David R; White, Forest M; Williams, Evan R; Wohlschlager, Therese; Wysocki, Vicki H.

Nat Chem Biol; 14(3): 206-214, 2018 Feb 14.

Artigo em Inglês | MEDLINE | ID: mdl-29443976

3.

Probabilistic Segmentation of Mass Spectrometry (MS) Images Helps Select Important Ions and Characterize Confidence in the Resulting Segments.

Bemis, Kyle D; Harry, April; Eberlin, Livia S; Ferreira, Christina R; van de Ven, Stephanie M; Mallick, Parag; Stolowitz, Mark; Vitek, Olga.

Mol Cell Proteomics; 15(5): 1761-72, 2016 05.

Artigo em Inglês | MEDLINE | ID: mdl-26796117

4.

Longitudinal Monitoring of Antibody Responses against Tumor Cells Using Magneto-nanosensors with a Nanoliter of Blood.

Lee, Jung-Rok; Chan, Carmel T; Ruderman, Daniel; Chuang, Hui-Yen; Gaster, Richard S; Atallah, Michelle; Mallick, Parag; Lowe, Scott W; Gambhir, Sanjiv S; Wang, Shan X.

Nano Lett; 17(11): 6644-6652, 2017 11 08.

Artigo em Inglês | MEDLINE | ID: mdl-28990786

5.

Protein biomarkers on tissue as imaged via MALDI mass spectrometry: A systematic approach to study the limits of detection.

van de Ven, Stephanie M W Y; Bemis, Kyle D; Lau, Kenneth; Adusumilli, Ravali; Kota, Uma; Stolowitz, Mark; Vitek, Olga; Mallick, Parag; Gambhir, Sanjiv S.

Proteomics; 16(11-12): 1660-9, 2016 06.

Artigo em Inglês | MEDLINE | ID: mdl-26970438

6.

Cardinal: an R package for statistical analysis of mass spectrometry-based imaging experiments.

Bemis, Kyle D; Harry, April; Eberlin, Livia S; Ferreira, Christina; van de Ven, Stephanie M; Mallick, Parag; Stolowitz, Mark; Vitek, Olga.

Bioinformatics; 31(14): 2418-20, 2015 Jul 15.

Artigo em Inglês | MEDLINE | ID: mdl-25777525

7.

AshwaMAX and Withaferin A inhibits gliomas in cellular and murine orthotopic models.

Chang, Edwin; Pohling, Christoph; Natarajan, Arutselvan; Witney, Timothy H; Kaur, Jasdeep; Xu, Lingyun; Gowrishankar, Gayatri; D'Souza, Aloma L; Murty, Surya; Schick, Sophie; Chen, Liyin; Wu, Nicholas; Khaw, Phoo; Mischel, Paul; Abbasi, Taher; Usmani, Shahabuddin; Mallick, Parag; Gambhir, Sanjiv S.

J Neurooncol; 126(2): 253-64, 2016 Jan.

Artigo em Inglês | MEDLINE | ID: mdl-26650066

8.

Characterizing deformability and surface friction of cancer cells.

Byun, Sangwon; Son, Sungmin; Amodei, Dario; Cermak, Nathan; Shaw, Josephine; Kang, Joon Ho; Hecht, Vivian C; Winslow, Monte M; Jacks, Tyler; Mallick, Parag; Manalis, Scott R.

Proc Natl Acad Sci U S A; 110(19): 7580-5, 2013 May 07.

Artigo em Inglês | MEDLINE | ID: mdl-23610435

9.

Anterior gradient 2 (AGR2): blood-based biomarker elevated in metastatic prostate cancer associated with the neuroendocrine phenotype.

Kani, Kian; Malihi, Paymaneh D; Jiang, Yuqiu; Wang, Haiying; Wang, Yixin; Ruderman, Daniel L; Agus, David B; Mallick, Parag; Gross, Mitchell E.

Prostate; 73(3): 306-15, 2013 Feb 15.

Artigo em Inglês | MEDLINE | ID: mdl-22911164

10.

A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas.

Farrah, Terry; Deutsch, Eric W; Omenn, Gilbert S; Campbell, David S; Sun, Zhi; Bletz, Julie A; Mallick, Parag; Katz, Jonathan E; Malmström, Johan; Ossola, Reto; Watts, Julian D; Lin, Biaoyang; Zhang, Hui; Moritz, Robert L; Aebersold, Ruedi.

Mol Cell Proteomics; 10(9): M110.006353, 2011 Sep.

Artigo em Inglês | MEDLINE | ID: mdl-21632744

11.

Peptide identification from mixture tandem mass spectra.

Wang, Jian; Pérez-Santiago, Josué; Katz, Jonathan E; Mallick, Parag; Bandeira, Nuno.

Mol Cell Proteomics; 9(7): 1476-85, 2010 Jul.

Artigo em Inglês | MEDLINE | ID: mdl-20348588

12.

Evolutionary modeling of combination treatment strategies to overcome resistance to tyrosine kinase inhibitors in non-small cell lung cancer.

Mumenthaler, Shannon M; Foo, Jasmine; Leder, Kevin; Choi, Nathan C; Agus, David B; Pao, William; Mallick, Parag; Michor, Franziska.

Mol Pharm; 8(6): 2069-79, 2011 Dec 05.

Artigo em Inglês | MEDLINE | ID: mdl-21995722

13.

Computational prediction of proteotypic peptides for quantitative proteomics.

Mallick, Parag; Schirle, Markus; Chen, Sharon S; Flory, Mark R; Lee, Hookeun; Martin, Daniel; Ranish, Jeffrey; Raught, Brian; Schmitt, Robert; Werner, Thilo; Kuster, Bernhard; Aebersold, Ruedi.

Nat Biotechnol; 25(1): 125-31, 2007 Jan.

Artigo em Inglês | MEDLINE | ID: mdl-17195840

14.

ProteoWizard: open source software for rapid proteomics tools development.

Kessner, Darren; Chambers, Matt; Burke, Robert; Agus, David; Mallick, Parag.

Bioinformatics; 24(21): 2534-6, 2008 Nov 01.

Artigo em Inglês | MEDLINE | ID: mdl-18606607

15.

Improving Precursor Selectivity in Data-Independent Acquisition Using Overlapping Windows.

Amodei, Dario; Egertson, Jarrett; MacLean, Brendan X; Johnson, Richard; Merrihew, Gennifer E; Keller, Austin; Marsh, Don; Vitek, Olga; Mallick, Parag; MacCoss, Michael J.

J Am Soc Mass Spectrom; 30(4): 669-684, 2019 Apr.

Artigo em Inglês | MEDLINE | ID: mdl-30671891

16.

Semantic workflows for benchmark challenges: Enhancing comparability, reusability and reproducibility.

Srivastava, Arunima; Adusumilli, Ravali; Boyce, Hunter; Garijo, Daniel; Ratnakar, Varun; Mayani, Rajiv; Yu, Thomas; Machiraju, Raghu; Gil, Yolanda; Mallick, Parag.

Pac Symp Biocomput; 24: 208-219, 2019.

Artigo em Inglês | MEDLINE | ID: mdl-30864323

17.

Loss of ER retention motif of AGR2 can impact mTORC signaling and promote cancer metastasis.

Tiemann, Katrin; Garri, Carolina; Lee, Sang Bok; Malihi, Paymaneh D; Park, Mincheol; Alvarez, Ruth M; Yap, Li Peng; Mallick, Parag; Katz, Jonathan E; Gross, Mitchell E; Kani, Kian.

Oncogene; 38(16): 3003-3018, 2019 04.

Artigo em Inglês | MEDLINE | ID: mdl-30575818

18.

The PeptideAtlas project.

Desiere, Frank; Deutsch, Eric W; King, Nichole L; Nesvizhskii, Alexey I; Mallick, Parag; Eng, Jimmy; Chen, Sharon; Eddes, James; Loevenich, Sandra N; Aebersold, Ruedi.

Nucleic Acids Res; 34(Database issue): D655-8, 2006 Jan 01.

Artigo em Inglês | MEDLINE | ID: mdl-16381952

19.

Building trans-omics evidence: using imaging and 'omics' to characterize cancer profiles.

Srivastava, Arunima; Kulkarni, Chaitanya; Mallick, Parag; Huang, Kun; Machiraju, Raghu.

Pac Symp Biocomput; 23: 377-387, 2018.

Artigo em Inglês | MEDLINE | ID: mdl-29218898

20.

A Bayesian Active Learning Experimental Design for Inferring Signaling Networks.

Ness, Robert O; Sachs, Karen; Mallick, Parag; Vitek, Olga.

J Comput Biol; 25(7): 709-725, 2018 Jul.

Artigo em Inglês | MEDLINE | ID: mdl-29927613

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